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Cytosim
PI
Cytoskeleton Simulator
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Classes | |
| class | Lock |
| class | TryLock |
Public Member Functions | |
| SimThread (void(*hold_callback)(void)) | |
| create a SimThread with given Parser permissions More... | |
| ~SimThread () | |
| destructor More... | |
| Simul & | sim () |
| Simul reference. | |
| void | period (unsigned int c) |
| set how many 'hold()' are necessary to halt the thread | |
| void | release () |
| allow the holding-thread to continue | |
| int | start () |
| start the thread to run a simulation More... | |
| int | persist () |
| continue to run the simulation after its normal termination | |
| void | stop () |
| gently stop the simulation More... | |
| void | cancel () |
| stop the simulation More... | |
| void | clear () |
| clear the simulation world | |
| void | reloadConfig () |
| halt the live simulation, read the config file and change the object parameters More... | |
| int | execute (std::istream &) |
| execute given code More... | |
| void | writeState () |
| save state to file More... | |
| void | writeProperties (std::ostream &, bool prune) |
| save properties to file | |
| void | openFile () |
| open file for input | |
| bool | good () |
| true if ready to read from file | |
| int | eof () |
| index of current frame | |
| int | frame () |
| index of current frame | |
| int | readFrame (int f) |
| attempt to load specified frame | |
| int | nextFrame () |
| load next frame in file | |
| Vector | extension () |
| Single * | handle () const |
| return current handle | |
| Single * | createHandle (const Vector &, real range) |
| make a new Single that can be controlled by the user | |
| bool | selectClosestHandle (const Vector &, real range) |
| swith current handle | |
| void | detachHandle () |
| detach current handle | |
| void | moveHandle (const Vector &) |
| move the current handle | |
| void | moveHandles (const Vector &) |
| move all handles | |
| void | deleteHandles () |
| delete all handles | |
| void | releaseHandle () |
| detach current handle from mouse control | |
Friends | |
| void * | run_thread (void *arg) |
| accessory function to call SimThread::run() | |
| void * | run_more_thread (void *arg) |
| accessory function to call SimThread::persist() | |
| SimThread | ( | void(*)(void) | hold_callback | ) |
This uses a Parser that cannot write to disc. The function callback is called when Parser::hold() is reached.
| ~SimThread | ( | ) |
Known issue: When quitting the application, this destructor might be called after the destructor of Simul(), in which case it will access non-existent data, most likely causing a crash().
| void cancel | ( | ) |
kill the live-thread immediately
| int execute | ( | std::istream & | iss | ) |
| void reloadConfig | ( | ) |
Read config file from the start, allowing parameters to be changed, while simulation objects remain as they are.
If the simulation is running live, this will pause it, read the config file, and allow it to proceed.
| int start | ( | ) |
This attempts to start the live simulation
| void stop | ( | ) |
ask the live-thread to exit at the next spontaneous halt
| void writeState | ( | ) |
Save current state in two files